/REMC/methylation/A27341_5_lane_gembs

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SAMPLE A27341_5_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26775923 21627432 80.77 %
NonRefCpG 262312 177914 67.83 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A27341_5_lane_gembs_coverage_refCpG.png ./IMG//A27341_5_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A27341_5_lane_gembs_coverage_nonRefCpG.png ./IMG//A27341_5_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A27341_5_lane_gembs_quality_refcpg.png ./IMG//A27341_5_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A27341_5_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8703086 16.52 % 5582312 12.18 % 59189 11.91 % 20968 5.51 %
Intermediate (0.3-0.7) 7617652 14.46 % 5910419 12.90 % 85940 17.29 % 50925 13.37 %
Methylated (0.7-1) 36357679 69.02 % 34330287 74.92 % 351823 70.80 % 308913 81.12 %
Median Methylation 0.840 0.870 0.850 0.880