{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 46831350, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 46233748, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.72, 
            "paired": 46831350, 
            "paired_qc_failed": 0, 
            "read1": 23415675, 
            "read1_qc_failed": 0, 
            "read2": 23415675, 
            "read2_qc_failed": 0, 
            "paired_properly": 42302010, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 90.33, 
            "with_itself": 45975503, 
            "with_itself_qc_failed": 0, 
            "singletons": 258245, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.55, 
            "diff_chroms": 2989469, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 107748822, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 105210529, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.64, 
            "paired": 107748822, 
            "paired_qc_failed": 0, 
            "read1": 53874411, 
            "read1_qc_failed": 0, 
            "read2": 53874411, 
            "read2_qc_failed": 0, 
            "paired_properly": 89353817, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 82.93, 
            "with_itself": 104162194, 
            "with_itself_qc_failed": 0, 
            "singletons": 1048335, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.97, 
            "diff_chroms": 11301530, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 19750231, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 585845, 
            "paired_opt_dupes": 1636, 
            "dupes_pct": 0.029663
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 39900791, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 469856, 
            "paired_opt_dupes": 1823, 
            "dupes_pct": 0.011776
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 19740480, 
            "distinct_read_pairs": 19155235, 
            "one_read_pair": 18669364, 
            "two_read_pair": 423827, 
            "NRF": 0.970353, 
            "PBC1": 0.974635, 
            "PBC2": 44.049492
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 39896493, 
            "distinct_read_pairs": 39426880, 
            "one_read_pair": 38982156, 
            "two_read_pair": 431298, 
            "NRF": 0.988229, 
            "PBC1": 0.98872, 
            "PBC2": 90.383345
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 38328772, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 38328772, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 38328772, 
            "paired_qc_failed": 0, 
            "read1": 19164386, 
            "read1_qc_failed": 0, 
            "read2": 19164386, 
            "read2_qc_failed": 0, 
            "paired_properly": 38328772, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 38328772, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 78861870, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 78861870, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 78861870, 
            "paired_qc_failed": 0, 
            "read1": 39430935, 
            "read1_qc_failed": 0, 
            "read2": 39430935, 
            "read2_qc_failed": 0, 
            "paired_properly": 78861870, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 78861870, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 94621, 
        "Np": 0, 
        "N_opt": 94621, 
        "N_consv": 94621, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 160, 
            "corr_est_frag_len": 0.268078886222497, 
            "phantom_peak": 55, 
            "corr_phantom_peak": 0.2130279, 
            "argmin_corr": 1500, 
            "min_corr": 0.1638319, 
            "NSC": 1.636305, 
            "RSC": 2.119013
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.655918569732
        }, 
        "rep1-pr1": {
            "FRiP": 0.649162453545
        }, 
        "rep1-pr2": {
            "FRiP": 0.649142667832
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.626344410479
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.0842520050591, 
            "auc": 0.493447887697, 
            "ch_div": 0.355811638071, 
            "elbow_pt": 1.76492781137e-199, 
            "jsd": 0.858686568596, 
            "syn_auc": 0.49775467116, 
            "syn_elbow_pt": 0.493493319003, 
            "syn_jsd": 0.589353989664
        }
    ]
}
