/Martin Hirst/PX0720_CCGTCC_10_lane_gembs/HCVFLCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 176634878 | 100.00 % | 88317439 | 100.00 % | 88317439 | 100.00 % |
| General Reads | 173019340 | 97.95 % | 87171752 | 98.70 % | 85847588 | 97.20 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 747374 | 0.42 % | 376163 | 0.43 % | 371211 | 0.42 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2868164 | 1.62 % | 769524 | 0.87 % | 2098640 | 2.38 % |
| Bisulfite_reads C2T | 88341227 | 50.01 % | 44507406 | 50.39 % | 43833821 | 49.63 % |
| Bisulfite_reads G2A | 85425487 | 48.36 % | 43040509 | 48.73 % | 42384978 | 47.99 % |
| Concept | Value |
|---|---|
| Unique Fragments | 33232375 |
| Average Unique | 37.63 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9182637779 | 34.43 % | 4728060399 | 35.45 % | 4454577380 | 33.40 % |
| Base Counts Overall C | 3955997777 | 14.83 % | 2116758200 | 15.87 % | 1839239577 | 13.79 % |
| Base Counts Overall G | 4386214002 | 16.45 % | 2022288169 | 15.16 % | 2363925833 | 17.73 % |
| Base Counts Overall T | 8967905318 | 33.62 % | 4379985634 | 32.84 % | 4587919684 | 34.40 % |
| Base Counts Overall N | 179111702 | 0.67 % | 88840887 | 0.67 % | 90270815 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9725984609922074 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 55643344 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 88317439 |
| 150 | 88317439 |
| Insert Size Histogram |
|---|
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