/Martin Hirst/PX0720_CCGTCC_10_lane_gembs/HF7JYCCXY_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 149676000 | 100.00 % | 74838000 | 100.00 % | 74838000 | 100.00 % |
| General Reads | 146418020 | 97.82 % | 73786941 | 98.60 % | 72631079 | 97.05 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 635221 | 0.42 % | 320117 | 0.43 % | 315104 | 0.42 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2622759 | 1.75 % | 730942 | 0.98 % | 1891817 | 2.53 % |
| Bisulfite_reads C2T | 74748024 | 49.94 % | 37667151 | 50.33 % | 37080873 | 49.55 % |
| Bisulfite_reads G2A | 72305217 | 48.31 % | 36439907 | 48.69 % | 35865310 | 47.92 % |
| Concept | Value |
|---|---|
| Unique Fragments | 27650302 |
| Average Unique | 36.95 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 7810834973 | 34.56 % | 4015476882 | 35.53 % | 3795358091 | 33.59 % |
| Base Counts Overall C | 3333041956 | 14.75 % | 1792395540 | 15.86 % | 1540646416 | 13.63 % |
| Base Counts Overall G | 3739105770 | 16.54 % | 1718804039 | 15.21 % | 2020301731 | 17.88 % |
| Base Counts Overall T | 7565700821 | 33.47 % | 3698131276 | 32.73 % | 3867569545 | 34.22 % |
| Base Counts Overall N | 152392480 | 0.67 % | 75730263 | 0.67 % | 76662217 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.970788137279127 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 46587427 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 74838000 |
| 150 | 74838000 |
| Insert Size Histogram |
|---|
 |