/Martin Hirst/PX0720_CCGTCC_10_lane_gembs/HF7JYCCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 150027166 | 100.00 % | 75013583 | 100.00 % | 75013583 | 100.00 % |
| General Reads | 146835620 | 97.87 % | 73959052 | 98.59 % | 72876568 | 97.15 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 639901 | 0.43 % | 322102 | 0.43 % | 317799 | 0.42 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2551645 | 1.70 % | 732429 | 0.98 % | 1819216 | 2.43 % |
| Bisulfite_reads C2T | 74947987 | 49.96 % | 37746623 | 50.32 % | 37201364 | 49.59 % |
| Bisulfite_reads G2A | 72527534 | 48.34 % | 36534531 | 48.70 % | 35993003 | 47.98 % |
| Concept | Value |
|---|---|
| Unique Fragments | 27731361 |
| Average Unique | 36.97 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 7831432620 | 34.57 % | 4023316703 | 35.52 % | 3808115917 | 33.62 % |
| Base Counts Overall C | 3343366891 | 14.76 % | 1796244971 | 15.86 % | 1547121920 | 13.66 % |
| Base Counts Overall G | 3743769560 | 16.53 % | 1724123080 | 15.22 % | 2019646480 | 17.83 % |
| Base Counts Overall T | 7582927074 | 33.47 % | 3707511057 | 32.73 % | 3875416017 | 34.21 % |
| Base Counts Overall N | 152605921 | 0.67 % | 75855222 | 0.67 % | 76750699 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9715138430650503 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 46770517 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 75013583 |
| 150 | 75013583 |
| Insert Size Histogram |
|---|
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