/Martin Hirst/PX0720_CCGTCC_10_lane_gembs/HHFYJCCXY_5_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 162200454 | 100.00 % | 81100227 | 100.00 % | 81100227 | 100.00 % |
| General Reads | 157136585 | 96.88 % | 79894848 | 98.51 % | 77241737 | 95.24 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 672148 | 0.41 % | 341520 | 0.42 % | 330628 | 0.41 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4391721 | 2.71 % | 863859 | 1.07 % | 3527862 | 4.35 % |
| Bisulfite_reads C2T | 80181663 | 49.43 % | 40761590 | 50.26 % | 39420073 | 48.61 % |
| Bisulfite_reads G2A | 77627070 | 47.86 % | 39474778 | 48.67 % | 38152292 | 47.04 % |
| Concept | Value |
|---|---|
| Unique Fragments | 29059867 |
| Average Unique | 35.83 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8386850616 | 34.24 % | 4338908066 | 35.43 % | 4047942550 | 33.05 % |
| Base Counts Overall C | 3632827541 | 14.83 % | 1950919894 | 15.93 % | 1681907647 | 13.73 % |
| Base Counts Overall G | 4062466985 | 16.59 % | 1853197408 | 15.13 % | 2209269577 | 18.04 % |
| Base Counts Overall T | 8245920722 | 33.67 % | 4021044856 | 32.84 % | 4224875866 | 34.50 % |
| Base Counts Overall N | 164202690 | 0.67 % | 82064053 | 0.67 % | 82138637 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9701610332858744 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 48115843 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 81100227 |
| 150 | 81100227 |
| Insert Size Histogram |
|---|
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