/Martin Hirst/PX0720_CCGTCC_10_lane_gembs/HHFYJCCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 159569292 | 100.00 % | 79784646 | 100.00 % | 79784646 | 100.00 % |
| General Reads | 154301748 | 96.70 % | 78593602 | 98.51 % | 75708146 | 94.89 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 662853 | 0.42 % | 337550 | 0.42 % | 325303 | 0.41 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4604691 | 2.89 % | 853494 | 1.07 % | 3751197 | 4.70 % |
| Bisulfite_reads C2T | 78725423 | 49.34 % | 40093959 | 50.25 % | 38631464 | 48.42 % |
| Bisulfite_reads G2A | 76239178 | 47.78 % | 38837193 | 48.68 % | 37401985 | 46.88 % |
| Concept | Value |
|---|---|
| Unique Fragments | 28536875 |
| Average Unique | 35.77 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8244886442 | 34.22 % | 4271604961 | 35.46 % | 3973281481 | 32.98 % |
| Base Counts Overall C | 3575245384 | 14.84 % | 1917864508 | 15.92 % | 1657380876 | 13.76 % |
| Base Counts Overall G | 4010202000 | 16.64 % | 1820586700 | 15.11 % | 2189615300 | 18.17 % |
| Base Counts Overall T | 8102265552 | 33.63 % | 3956728273 | 32.84 % | 4145537279 | 34.41 % |
| Base Counts Overall N | 162363714 | 0.67 % | 80697104 | 0.67 % | 81666610 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9701959048132804 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 47141683 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 79784646 |
| 150 | 79784646 |
| Insert Size Histogram |
|---|
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