/Martin Hirst/PX0720_CCGTCC_10_lane_gembs/HHFYJCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 153212424 | 100.00 % | 76606212 | 100.00 % | 76606212 | 100.00 % |
| General Reads | 148276759 | 96.78 % | 75396127 | 98.42 % | 72880632 | 95.14 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 637762 | 0.42 % | 323960 | 0.42 % | 313802 | 0.41 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4297903 | 2.81 % | 886125 | 1.16 % | 3411778 | 4.45 % |
| Bisulfite_reads C2T | 75662188 | 49.38 % | 38468936 | 50.22 % | 37193252 | 48.55 % |
| Bisulfite_reads G2A | 73252333 | 47.81 % | 37251151 | 48.63 % | 36001182 | 47.00 % |
| Concept | Value |
|---|---|
| Unique Fragments | 27389464 |
| Average Unique | 35.75 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 7921356963 | 34.24 % | 4102529423 | 35.47 % | 3818827540 | 33.01 % |
| Base Counts Overall C | 3434985276 | 14.85 % | 1843406729 | 15.94 % | 1591578547 | 13.76 % |
| Base Counts Overall G | 3839261625 | 16.59 % | 1748072562 | 15.11 % | 2091189063 | 18.08 % |
| Base Counts Overall T | 7783951892 | 33.65 % | 3796343098 | 32.82 % | 3987608794 | 34.47 % |
| Base Counts Overall N | 155520268 | 0.67 % | 77186200 | 0.67 % | 78334068 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9697398505960962 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 45240595 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 76606212 |
| 150 | 76606212 |
| Insert Size Histogram |
|---|
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