/Martin Hirst/PX0720_CCGTCC_10_lane_gembs
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1569323348 | 100.00 % | 784661674 | 100.00 % | 784661674 | 100.00 % |
| General Reads | 1527559602 | 97.34 % | 773174724 | 98.54 % | 754384878 | 96.14 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6567565 | 0.42 % | 3321469 | 0.42 % | 3246096 | 0.41 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 35196181 | 2.24 % | 8165481 | 1.04 % | 27030700 | 3.44 % |
| Bisulfite_reads C2T | 779619841 | 49.68 % | 394568816 | 50.29 % | 385051025 | 49.07 % |
| Bisulfite_reads G2A | 754507326 | 48.08 % | 381927377 | 48.67 % | 372579949 | 47.48 % |
| Concept | Value |
|---|---|
| Unique Fragments | 285609946 |
| Average Unique | 36.40 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 81489835330 | 34.39 % | 42018517149 | 35.46 % | 39471318181 | 33.31 % |
| Base Counts Overall C | 35078669947 | 14.80 % | 18835035076 | 15.90 % | 16243634871 | 13.71 % |
| Base Counts Overall G | 39192770520 | 16.54 % | 17979297237 | 15.17 % | 21213473283 | 17.90 % |
| Base Counts Overall T | 79612755736 | 33.60 % | 38857801106 | 32.80 % | 40754954630 | 34.40 % |
| Base Counts Overall N | 1593794015 | 0.67 % | 793262206 | 0.67 % | 800531809 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9705842398450507 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 476508995 |
| Mapping Quality Histogram |
|---|
| |
| Insert Size Histogram |
|---|
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| LANE REPORTS |
|---|
| HF7JYCCXY_6_2 |
| HF7JYCCXY_7_2 |
| HF7JYCCXY_5_2 |
| HHFYJCCXY_6_2 |
| HHFYJCCXY_4_2 |
| HF7JYCCXY_8_2 |
| HHFYJCCXY_5_2 |
| HHFYJCCXY_7_2 |
| HCVFLCCXY_8_2 |
| HHFYJCCXY_8_2 |