/Martin Hirst/mapping_coverage/PX0720_CCGTCC_10_lane_gembs
BACK
SAMPLE PX0720_CCGTCC_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1484146376 |
100% |
206259102463 |
100% |
| Mapped |
1456836802 |
98.16 % |
202162666363 |
98.01 % |
| Passed |
475484590 |
32.04 % |
54959834563 |
26.65 % |
| NotPassed |
981352212 |
66.12 % |
147202831800 |
71.37 % |
| |
|
|
|
|
| LowMAPQ |
693900652 |
46.75 % |
104085097800 |
50.46 % |
| MateUnmapped |
27309574 |
1.84 % |
4096436100 |
1.99 % |
| Duplicate |
45094268 |
3.04 % |
6764140200 |
3.28 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
7347224 |
0.50 % |
1102083600 |
0.53 % |
| |
|
|
|
|
| NotCorrectlyAligned |
235010068 |
15.83 % |
35251510200 |
17.09 % |
| Unmapped |
27309574 |
1.84 % |
4096436100 |
1.99 % |
Base Level Counts
| Bases |
# |
% |
| Total |
71223248400 |
100% |
| Passed |
50437973545 |
70.82 % |
| Trimmed |
1780088122 |
2.50 % |
| Clipped |
3898176780 |
5.47 % |
| Overlapping |
12365237057 |
17.36 % |
| LowQuality |
2741772896 |
3.85 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |