/Martin Hirst/methylation/PX0720_CCGTCC_10_lane_gembs
BACK
SAMPLE PX0720_CCGTCC_10_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26199998 |
18420283 |
70.31 % |
| NonRefCpG |
531584 |
114513 |
21.54 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5772476 |
11.66 % |
4513129 |
11.58 % |
282575 |
31.85 % |
36461 |
11.53 % |
| Intermediate (0.3-0.7) |
8094003 |
16.35 % |
4688867 |
12.03 % |
229837 |
25.91 % |
54798 |
17.32 % |
| Methylated (0.7-1) |
35645560 |
71.99 % |
29777174 |
76.39 % |
374700 |
42.24 % |
225042 |
71.15 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.850 |
|
0.870 |
|
0.590 |
|
0.850 |
|