{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 105174816, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 102403744, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.37, 
            "paired": 105174816, 
            "paired_qc_failed": 0, 
            "read1": 52587408, 
            "read1_qc_failed": 0, 
            "read2": 52587408, 
            "read2_qc_failed": 0, 
            "paired_properly": 94985503, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 90.31, 
            "with_itself": 101478473, 
            "with_itself_qc_failed": 0, 
            "singletons": 925271, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.88, 
            "diff_chroms": 3993958, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 115662734, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 113038251, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.73, 
            "paired": 115662734, 
            "paired_qc_failed": 0, 
            "read1": 57831367, 
            "read1_qc_failed": 0, 
            "read2": 57831367, 
            "read2_qc_failed": 0, 
            "paired_properly": 109036939, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 94.27, 
            "with_itself": 112377816, 
            "with_itself_qc_failed": 0, 
            "singletons": 660435, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.57, 
            "diff_chroms": 843986, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 43528086, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1471281, 
            "paired_opt_dupes": 2160, 
            "dupes_pct": 0.033801
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 48381997, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 577446, 
            "paired_opt_dupes": 2513, 
            "dupes_pct": 0.011935
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 43435779, 
            "distinct_read_pairs": 41988752, 
            "one_read_pair": 40586563, 
            "two_read_pair": 1361233, 
            "NRF": 0.966686, 
            "PBC1": 0.966606, 
            "PBC2": 29.816029
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 48321027, 
            "distinct_read_pairs": 47755668, 
            "one_read_pair": 47208127, 
            "two_read_pair": 537718, 
            "NRF": 0.9883, 
            "PBC1": 0.988535, 
            "PBC2": 87.793466
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 84113610, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 84113610, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 84113610, 
            "paired_qc_failed": 0, 
            "read1": 42056805, 
            "read1_qc_failed": 0, 
            "read2": 42056805, 
            "read2_qc_failed": 0, 
            "paired_properly": 84113610, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 84113610, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 95609102, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 95609102, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 95609102, 
            "paired_qc_failed": 0, 
            "read1": 47804551, 
            "read1_qc_failed": 0, 
            "read2": 47804551, 
            "read2_qc_failed": 0, 
            "paired_properly": 95609102, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 95609102, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 143108, 
        "Np": 0, 
        "N_opt": 143108, 
        "N_consv": 143108, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": -10, 
            "corr_est_frag_len": 0.173346387726708, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1734171, 
            "argmin_corr": 1500, 
            "min_corr": 0.169617, 
            "NSC": 1.021987, 
            "RSC": 0.9813944
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.326792248391
        }, 
        "rep1-pr1": {
            "FRiP": 0.292603514741
        }, 
        "rep1-pr2": {
            "FRiP": 0.292599956293
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.269561196542
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.2541921962, 
            "auc": 0.495565023159, 
            "ch_div": 0.102452092726, 
            "elbow_pt": 0.0, 
            "jsd": 0.673512800264, 
            "syn_auc": 0.501924798989, 
            "syn_elbow_pt": 0.17726017535, 
            "syn_jsd": 0.322364711599
        }
    ]
}
