{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 87334890, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 82776628, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 94.78, 
            "paired": 87334890, 
            "paired_qc_failed": 0, 
            "read1": 43667445, 
            "read1_qc_failed": 0, 
            "read2": 43667445, 
            "read2_qc_failed": 0, 
            "paired_properly": 78167827, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 89.5, 
            "with_itself": 81569005, 
            "with_itself_qc_failed": 0, 
            "singletons": 1207623, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.38, 
            "diff_chroms": 386907, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 147967716, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 141073415, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.34, 
            "paired": 147967716, 
            "paired_qc_failed": 0, 
            "read1": 73983858, 
            "read1_qc_failed": 0, 
            "read2": 73983858, 
            "read2_qc_failed": 0, 
            "paired_properly": 129978073, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 87.84, 
            "with_itself": 139642816, 
            "with_itself_qc_failed": 0, 
            "singletons": 1430599, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.97, 
            "diff_chroms": 4101665, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 35316080, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 6381894, 
            "paired_opt_dupes": 368, 
            "dupes_pct": 0.180708
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 58170389, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1433825, 
            "paired_opt_dupes": 3355, 
            "dupes_pct": 0.024649
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 35280923, 
            "distinct_read_pairs": 28907493, 
            "one_read_pair": 23541773, 
            "two_read_pair": 4529260, 
            "NRF": 0.819352, 
            "PBC1": 0.814383, 
            "PBC2": 5.197708
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 58124153, 
            "distinct_read_pairs": 56701457, 
            "one_read_pair": 55332829, 
            "two_read_pair": 1333630, 
            "NRF": 0.975523, 
            "PBC1": 0.975863, 
            "PBC2": 41.49039
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 57868372, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 57868372, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 57868372, 
            "paired_qc_failed": 0, 
            "read1": 28934186, 
            "read1_qc_failed": 0, 
            "read2": 28934186, 
            "read2_qc_failed": 0, 
            "paired_properly": 57868372, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 57868372, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 113473128, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 113473128, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 113473128, 
            "paired_qc_failed": 0, 
            "read1": 56736564, 
            "read1_qc_failed": 0, 
            "read2": 56736564, 
            "read2_qc_failed": 0, 
            "paired_properly": 113473128, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 113473128, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 61125, 
        "Np": 0, 
        "N_opt": 61125, 
        "N_consv": 61125, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 150, 
            "corr_est_frag_len": 0.189061751202806, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1742476, 
            "argmin_corr": 1500, 
            "min_corr": 0.1530664, 
            "NSC": 1.235162, 
            "RSC": 1.699402
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.267402458518
        }, 
        "rep1-pr1": {
            "FRiP": 0.278934467378
        }, 
        "rep1-pr2": {
            "FRiP": 0.279282266441
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.235017000435
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.2365898657, 
            "auc": 0.49465577617, 
            "ch_div": 0.118836604417, 
            "elbow_pt": 1.16070141118e-300, 
            "jsd": 0.665511774502, 
            "syn_auc": 0.507428477504, 
            "syn_elbow_pt": 0.265427678448, 
            "syn_jsd": 0.368673214849
        }
    ]
}
