/Martin Hirst/PX0821_GATCAG_6_lane_gembs/HJ353CCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 327606782 | 100.00 % | 163803391 | 100.00 % | 163803391 | 100.00 % |
| General Reads | 315478015 | 96.30 % | 159381094 | 97.30 % | 156096921 | 95.30 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4321128 | 1.32 % | 2189561 | 1.34 % | 2131567 | 1.30 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7807639 | 2.38 % | 2232736 | 1.36 % | 5574903 | 3.40 % |
| Bisulfite_reads C2T | 162691019 | 49.66 % | 82184478 | 50.17 % | 80506541 | 49.15 % |
| Bisulfite_reads G2A | 157108124 | 47.96 % | 79386177 | 48.46 % | 77721947 | 47.45 % |
| Concept | Value |
|---|---|
| Unique Fragments | 69258673 |
| Average Unique | 42.28 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 17834922263 | 36.05 % | 9218775000 | 37.27 % | 8616147263 | 34.83 % |
| Base Counts Overall C | 6932699758 | 14.01 % | 3726890839 | 15.07 % | 3205808919 | 12.96 % |
| Base Counts Overall G | 7443229036 | 15.05 % | 3389233867 | 13.70 % | 4053995169 | 16.39 % |
| Base Counts Overall T | 16925202073 | 34.21 % | 8233533979 | 33.29 % | 8691668094 | 35.14 % |
| Base Counts Overall N | 332570952 | 0.67 % | 165878356 | 0.67 % | 166692596 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9679110338642172 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 108162368 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 163803391 |
| 150 | 163803391 |
| Insert Size Histogram |
|---|
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