/Martin Hirst/PX0821_GATCAG_6_lane_gembs/HL2VKCCXY_4_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 291964890 | 100.00 % | 145982445 | 100.00 % | 145982445 | 100.00 % |
| General Reads | 280905173 | 96.21 % | 141884274 | 97.19 % | 139020899 | 95.23 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3845406 | 1.32 % | 1946410 | 1.33 % | 1898996 | 1.30 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7214311 | 2.47 % | 2151761 | 1.47 % | 5062550 | 3.47 % |
| Bisulfite_reads C2T | 144839881 | 49.61 % | 73153357 | 50.11 % | 71686524 | 49.11 % |
| Bisulfite_reads G2A | 139910698 | 47.92 % | 70677327 | 48.41 % | 69233371 | 47.43 % |
| Concept | Value |
|---|---|
| Unique Fragments | 62740296 |
| Average Unique | 42.98 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 15887148338 | 36.04 % | 8203498385 | 37.22 % | 7683649953 | 34.86 % |
| Base Counts Overall C | 6162535738 | 13.98 % | 3303092026 | 14.98 % | 2859443712 | 12.97 % |
| Base Counts Overall G | 6554063120 | 14.87 % | 3008781495 | 13.65 % | 3545281625 | 16.08 % |
| Base Counts Overall T | 15187984780 | 34.45 % | 7380761705 | 33.48 % | 7807223075 | 35.42 % |
| Base Counts Overall N | 294966414 | 0.67 % | 147215584 | 0.67 % | 147750830 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9692839916110536 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 97705652 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 145982445 |
| 150 | 145982445 |
| Insert Size Histogram |
|---|
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