/Martin Hirst/PX0821_GATCAG_6_lane_gembs/HL2VKCCXY_5_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 285847292 | 100.00 % | 142923646 | 100.00 % | 142923646 | 100.00 % |
| General Reads | 274737598 | 96.11 % | 138944093 | 97.22 % | 135793505 | 95.01 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3772727 | 1.32 % | 1912222 | 1.34 % | 1860505 | 1.30 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7336967 | 2.57 % | 2067331 | 1.45 % | 5269636 | 3.69 % |
| Bisulfite_reads C2T | 141680291 | 49.57 % | 71645833 | 50.13 % | 70034458 | 49.00 % |
| Bisulfite_reads G2A | 136830034 | 47.87 % | 69210482 | 48.42 % | 67619552 | 47.31 % |
| Concept | Value |
|---|---|
| Unique Fragments | 61374078 |
| Average Unique | 42.94 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 15562558040 | 36.06 % | 8040181346 | 37.26 % | 7522376694 | 34.86 % |
| Base Counts Overall C | 6028643398 | 13.97 % | 3233598254 | 14.98 % | 2795045144 | 12.95 % |
| Base Counts Overall G | 6407133008 | 14.84 % | 2936766242 | 13.61 % | 3470366766 | 16.08 % |
| Base Counts Overall T | 14873016798 | 34.46 % | 7226809495 | 33.49 % | 7646207303 | 35.43 % |
| Base Counts Overall N | 291589848 | 0.68 % | 144115209 | 0.67 % | 147474639 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9696675558345442 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 95430371 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 142923646 |
| 150 | 142923646 |
| Insert Size Histogram |
|---|
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