/Martin Hirst/PX0821_GATCAG_6_lane_gembs/HL2VKCCXY_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 294236138 | 100.00 % | 147118069 | 100.00 % | 147118069 | 100.00 % |
| General Reads | 283111817 | 96.22 % | 143025700 | 97.22 % | 140086117 | 95.22 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3890762 | 1.32 % | 1970506 | 1.34 % | 1920256 | 1.31 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7233559 | 2.46 % | 2121863 | 1.44 % | 5111696 | 3.47 % |
| Bisulfite_reads C2T | 145992385 | 49.62 % | 73750823 | 50.13 % | 72241562 | 49.10 % |
| Bisulfite_reads G2A | 141010194 | 47.92 % | 71245383 | 48.43 % | 69764811 | 47.42 % |
| Concept | Value |
|---|---|
| Unique Fragments | 63106061 |
| Average Unique | 42.89 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 16021585015 | 36.06 % | 8274008513 | 37.25 % | 7747576502 | 34.88 % |
| Base Counts Overall C | 6213276034 | 13.98 % | 3331173268 | 15.00 % | 2882102766 | 12.97 % |
| Base Counts Overall G | 6587738065 | 14.83 % | 3024893195 | 13.62 % | 3562844870 | 16.04 % |
| Base Counts Overall T | 15308985421 | 34.46 % | 7436285202 | 33.47 % | 7872700219 | 35.44 % |
| Base Counts Overall N | 298072303 | 0.67 % | 148468241 | 0.67 % | 149604062 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9691934335969773 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 98259218 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 147118069 |
| 150 | 147118069 |
| Insert Size Histogram |
|---|
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