/Martin Hirst/PX0821_GATCAG_6_lane_gembs/HL2VKCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 296093054 | 100.00 % | 148046527 | 100.00 % | 148046527 | 100.00 % |
| General Reads | 284833186 | 96.20 % | 143886227 | 97.19 % | 140946959 | 95.20 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3924934 | 1.33 % | 1987405 | 1.34 % | 1937529 | 1.31 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7334934 | 2.48 % | 2172895 | 1.47 % | 5162039 | 3.49 % |
| Bisulfite_reads C2T | 146896102 | 49.61 % | 74200356 | 50.12 % | 72695746 | 49.10 % |
| Bisulfite_reads G2A | 141862018 | 47.91 % | 71673276 | 48.41 % | 70188742 | 47.41 % |
| Concept | Value |
|---|---|
| Unique Fragments | 63320038 |
| Average Unique | 42.77 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 16121449885 | 36.06 % | 8329016922 | 37.26 % | 7792432963 | 34.86 % |
| Base Counts Overall C | 6261708100 | 14.01 % | 3361746943 | 15.04 % | 2899961157 | 12.97 % |
| Base Counts Overall G | 6631232309 | 14.83 % | 3041244480 | 13.60 % | 3589987829 | 16.06 % |
| Base Counts Overall T | 15394598649 | 34.43 % | 7473456910 | 33.43 % | 7921141739 | 35.43 % |
| Base Counts Overall N | 301062211 | 0.67 % | 149560322 | 0.67 % | 151501889 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9691299511058831 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 98649025 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 148046527 |
| 150 | 148046527 |
| Insert Size Histogram |
|---|
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