/Martin Hirst/PX0821_GATCAG_6_lane_gembs

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SAMPLE PX0821_GATCAG_6_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1789876858 100.00 % 894938429 100.00 % 894938429 100.00 %
General Reads 1721967858 96.21 % 870061762 97.22 % 851906096 95.19 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 23634883 1.32 % 11970889 1.34 % 11663994 1.30 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 44274117 2.47 % 12905778 1.44 % 31368339 3.51 %
Bisulfite_reads C2T 888002315 49.61 % 448650623 50.13 % 439351692 49.09 %
Bisulfite_reads G2A 857600426 47.91 % 433382028 48.43 % 424218398 47.40 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 382954067
Average Unique 42.79 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 97439123812 36.05 % 50330726843 37.24 % 47108396969 34.86 %
Base Counts Overall C 37814326918 13.99 % 20285381213 15.01 % 17528945705 12.97 %
Base Counts Overall G 40210889111 14.88 % 18428949086 13.64 % 21781940025 16.12 %
Base Counts Overall T 92991356164 34.41 % 45187384927 33.44 % 47803971237 35.37 %
Base Counts Overall N 1815709553 0.67 % 903260710 0.67 % 912448843 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9690276694440193
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 596518655



Mapping Quality

Mapping Quality Histogram
PX0821_GATCAG_6_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
PX0821_GATCAG_6_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HJ353CCXY_8_2
HL2VKCCXY_6_2
HL2VKCCXY_7_2
HL2VKCCXY_4_2
HL2VKCCXY_5_2
HL2VKCCXY_8_2