/Martin Hirst/methylation/PX0821_GATCAG_6_lane_gembs
BACK
SAMPLE PX0821_GATCAG_6_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26557698 |
22119288 |
83.29 % |
| NonRefCpG |
221956 |
51262 |
23.10 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5639122 |
10.85 % |
4851748 |
10.48 % |
118937 |
30.75 % |
19966 |
12.24 % |
| Intermediate (0.3-0.7) |
5793815 |
11.15 % |
4213694 |
9.10 % |
92867 |
24.01 % |
28805 |
17.65 % |
| Methylated (0.7-1) |
40526039 |
78.00 % |
37218972 |
80.41 % |
174939 |
45.23 % |
114395 |
70.11 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.890 |
|
0.900 |
|
0.630 |
|
0.850 |
|