{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 234801308, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 233240885, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 99.34, 
            "paired": 234801308, 
            "paired_qc_failed": 0, 
            "read1": 117400654, 
            "read1_qc_failed": 0, 
            "read2": 117400654, 
            "read2_qc_failed": 0, 
            "paired_properly": 222557623, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 94.79, 
            "with_itself": 232203811, 
            "with_itself_qc_failed": 0, 
            "singletons": 1037074, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.44, 
            "diff_chroms": 165571, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 201652566, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 198032065, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.2, 
            "paired": 201652566, 
            "paired_qc_failed": 0, 
            "read1": 100826283, 
            "read1_qc_failed": 0, 
            "read2": 100826283, 
            "read2_qc_failed": 0, 
            "paired_properly": 194936556, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.67, 
            "with_itself": 196867125, 
            "with_itself_qc_failed": 0, 
            "singletons": 1164940, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.58, 
            "diff_chroms": 328067, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 103933298, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 3160403, 
            "paired_opt_dupes": 1578, 
            "dupes_pct": 0.030408
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 84633399, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1125235, 
            "paired_opt_dupes": 1306, 
            "dupes_pct": 0.013295
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 103920991, 
            "distinct_read_pairs": 100761834, 
            "one_read_pair": 97785693, 
            "two_read_pair": 2812265, 
            "NRF": 0.9696, 
            "PBC1": 0.970464, 
            "PBC2": 34.771152
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 84626173, 
            "distinct_read_pairs": 83501515, 
            "one_read_pair": 82459535, 
            "two_read_pair": 999176, 
            "NRF": 0.98671, 
            "PBC1": 0.987521, 
            "PBC2": 82.527538
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 201545790, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 201545790, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 201545790, 
            "paired_qc_failed": 0, 
            "read1": 100772895, 
            "read1_qc_failed": 0, 
            "read2": 100772895, 
            "read2_qc_failed": 0, 
            "paired_properly": 201545790, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 201545790, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 167016328, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 167016328, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 167016328, 
            "paired_qc_failed": 0, 
            "read1": 83508164, 
            "read1_qc_failed": 0, 
            "read2": 83508164, 
            "read2_qc_failed": 0, 
            "paired_properly": 167016328, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 167016328, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 291057, 
        "Np": 0, 
        "N_opt": 291057, 
        "N_consv": 291057, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 135, 
            "corr_est_frag_len": 0.188114422513704, 
            "phantom_peak": 55, 
            "corr_phantom_peak": 0.1820138, 
            "argmin_corr": 1500, 
            "min_corr": 0.1804581, 
            "NSC": 1.042427, 
            "RSC": 4.92163
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.603952624601
        }, 
        "rep1-pr1": {
            "FRiP": 0.572306057867
        }, 
        "rep1-pr2": {
            "FRiP": 0.572232251593
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.54375350635
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.15159356209, 
            "auc": 0.497134300284, 
            "ch_div": 0.180095999488, 
            "elbow_pt": 0.0, 
            "jsd": 0.690548588496, 
            "syn_auc": 0.502793758816, 
            "syn_elbow_pt": 0.33272218932, 
            "syn_jsd": 0.495526491305
        }
    ]
}
