/CEMT/A83594_2_lane_gembs

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SAMPLE A83594_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1107708196 100.00 % 553854098 100.00 % 553854098 100.00 %
General Reads 987562434 89.15 % 496593765 89.66 % 490968669 88.65 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 285841 0.03 % 143437 0.03 % 142404 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 119859921 10.82 % 57116896 10.31 % 62743025 11.33 %
Bisulfite_reads C2T 505600444 45.64 % 254137336 45.89 % 251463108 45.40 %
Bisulfite_reads G2A 482247831 43.54 % 242599866 43.80 % 239647965 43.27 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 424585371
Average Unique 76.66 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 63233027691 37.80 % 28165403374 33.68 % 35067624317 41.93 %
Base Counts Overall C 19654172074 11.75 % 2529656563 3.02 % 17124515511 20.48 %
Base Counts Overall G 19774119573 11.82 % 17080099122 20.42 % 2694020451 3.22 %
Base Counts Overall T 63473310319 37.95 % 35294921326 42.20 % 28178388993 33.69 %
Base Counts Overall N 1129307939 0.68 % 561888413 0.67 % 567419526 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.8874714157225182
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 475468777



Mapping Quality

Mapping Quality Histogram
A83594_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A83594_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HGCV2CCXY_5_2
HFJM5CCXY_4_2