/CEMT/mapping_coverage/A83594_2_lane_gembs
BACK
SAMPLE A83594_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
934213739 |
100% |
120441137793 |
100% |
| Mapped |
925297189 |
99.05 % |
119103655293 |
98.89 % |
| Passed |
745625330 |
79.81 % |
92152876443 |
76.51 % |
| NotPassed |
179671859 |
19.23 % |
26950778850 |
22.38 % |
| |
|
|
|
|
| LowMAPQ |
111881950 |
11.98 % |
16782292500 |
13.93 % |
| MateUnmapped |
8916550 |
0.95 % |
1337482500 |
1.11 % |
| Duplicate |
53467397 |
5.72 % |
8020109550 |
6.66 % |
| BadOrientation |
118 |
0.00 % |
17700 |
0.00 % |
| LargeInsertSize |
16620 |
0.00 % |
2493000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
14305774 |
1.53 % |
2145866100 |
1.78 % |
| Unmapped |
8916550 |
0.95 % |
1337482500 |
1.11 % |
Base Level Counts
| Bases |
# |
% |
| Total |
111833893650 |
100% |
| Passed |
86091834500 |
76.98 % |
| Trimmed |
3202980424 |
2.86 % |
| Clipped |
294418128 |
0.26 % |
| Overlapping |
19386599079 |
17.34 % |
| LowQuality |
2858061519 |
2.56 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |