/CEMT/methylation/A83594_2_lane_gembs

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SAMPLE A83594_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27196310 20991609 77.19 %
NonRefCpG 292025 184999 63.35 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A83594_2_lane_gembs_coverage_refCpG.png ./IMG//A83594_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A83594_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A83594_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A83594_2_lane_gembs_quality_refcpg.png ./IMG//A83594_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A83594_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4163693 7.85 % 1362930 3.11 % 66170 11.99 % 15909 3.92 %
Intermediate (0.3-0.7) 8365628 15.77 % 5487238 12.53 % 94356 17.10 % 50640 12.48 %
Methylated (0.7-1) 40516123 76.38 % 36933828 84.35 % 391189 70.90 % 339368 83.61 %
Median Methylation 0.880 0.900 0.860 0.900