{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 99347158, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 98092808, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.74, 
            "paired": 99347158, 
            "paired_qc_failed": 0, 
            "read1": 49673579, 
            "read1_qc_failed": 0, 
            "read2": 49673579, 
            "read2_qc_failed": 0, 
            "paired_properly": 96981290, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 97.62, 
            "with_itself": 97534981, 
            "with_itself_qc_failed": 0, 
            "singletons": 557827, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.56, 
            "diff_chroms": 46272, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 135840732, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 133934829, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.6, 
            "paired": 135840732, 
            "paired_qc_failed": 0, 
            "read1": 67920366, 
            "read1_qc_failed": 0, 
            "read2": 67920366, 
            "read2_qc_failed": 0, 
            "paired_properly": 128263399, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 94.42, 
            "with_itself": 133179397, 
            "with_itself_qc_failed": 0, 
            "singletons": 755432, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.56, 
            "diff_chroms": 132252, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 43782792, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 2084736, 
            "paired_opt_dupes": 4253, 
            "dupes_pct": 0.047615
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 56898377, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 573921, 
            "paired_opt_dupes": 4663, 
            "dupes_pct": 0.010087
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 43779060, 
            "distinct_read_pairs": 41694511, 
            "one_read_pair": 39700576, 
            "two_read_pair": 1910791, 
            "NRF": 0.952385, 
            "PBC1": 0.952178, 
            "PBC2": 20.777037
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 56891592, 
            "distinct_read_pairs": 56317967, 
            "one_read_pair": 55773200, 
            "two_read_pair": 533976, 
            "NRF": 0.989917, 
            "PBC1": 0.990327, 
            "PBC2": 104.448889
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 83396112, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 83396112, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 83396112, 
            "paired_qc_failed": 0, 
            "read1": 41698056, 
            "read1_qc_failed": 0, 
            "read2": 41698056, 
            "read2_qc_failed": 0, 
            "paired_properly": 83396112, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 83396112, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 112648912, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 112648912, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 112648912, 
            "paired_qc_failed": 0, 
            "read1": 56324456, 
            "read1_qc_failed": 0, 
            "read2": 56324456, 
            "read2_qc_failed": 0, 
            "paired_properly": 112648912, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 112648912, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 184749, 
        "Np": 0, 
        "N_opt": 184749, 
        "N_consv": 184749, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 150, 
            "corr_est_frag_len": 0.179500520651978, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1781702, 
            "argmin_corr": 1500, 
            "min_corr": 0.171643, 
            "NSC": 1.045778, 
            "RSC": 1.203807
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.367984796177
        }, 
        "rep1-pr1": {
            "FRiP": 0.322480809944
        }, 
        "rep1-pr2": {
            "FRiP": 0.322699711655
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.26519478151
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.217364143652, 
            "auc": 0.49554603136, 
            "ch_div": 0.123954649324, 
            "elbow_pt": 0.0, 
            "jsd": 0.662346983452, 
            "syn_auc": 0.497557281275, 
            "syn_elbow_pt": 0.229239741629, 
            "syn_jsd": 0.37651834185
        }
    ]
}
