{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 101296870, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 97242696, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.0, 
            "paired": 101296870, 
            "paired_qc_failed": 0, 
            "read1": 50648435, 
            "read1_qc_failed": 0, 
            "read2": 50648435, 
            "read2_qc_failed": 0, 
            "paired_properly": 95567806, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 94.34, 
            "with_itself": 96192964, 
            "with_itself_qc_failed": 0, 
            "singletons": 1049732, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.04, 
            "diff_chroms": 88547, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 135840732, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 133934828, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.6, 
            "paired": 135840732, 
            "paired_qc_failed": 0, 
            "read1": 67920366, 
            "read1_qc_failed": 0, 
            "read2": 67920366, 
            "read2_qc_failed": 0, 
            "paired_properly": 128263268, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 94.42, 
            "with_itself": 133179396, 
            "with_itself_qc_failed": 0, 
            "singletons": 755432, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.56, 
            "diff_chroms": 132439, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 39735347, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 2933463, 
            "paired_opt_dupes": 4912, 
            "dupes_pct": 0.073825
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 56897458, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 573864, 
            "paired_opt_dupes": 4661, 
            "dupes_pct": 0.010086
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 39729675, 
            "distinct_read_pairs": 36796652, 
            "one_read_pair": 34050894, 
            "two_read_pair": 2578693, 
            "NRF": 0.926176, 
            "PBC1": 0.92538, 
            "PBC2": 13.20471
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 56890671, 
            "distinct_read_pairs": 56317103, 
            "one_read_pair": 55772301, 
            "two_read_pair": 534023, 
            "NRF": 0.989918, 
            "PBC1": 0.990326, 
            "PBC2": 104.438013
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 73603768, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 73603768, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 73603768, 
            "paired_qc_failed": 0, 
            "read1": 36801884, 
            "read1_qc_failed": 0, 
            "read2": 36801884, 
            "read2_qc_failed": 0, 
            "paired_properly": 73603768, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 73603768, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 112647188, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 112647188, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 112647188, 
            "paired_qc_failed": 0, 
            "read1": 56323594, 
            "read1_qc_failed": 0, 
            "read2": 56323594, 
            "read2_qc_failed": 0, 
            "paired_properly": 112647188, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 112647188, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 117935, 
        "Np": 0, 
        "N_opt": 117935, 
        "N_consv": 117935, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": -10, 
            "corr_est_frag_len": 0.186227220340397, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2041971, 
            "argmin_corr": 1500, 
            "min_corr": 0.1761026, 
            "NSC": 1.057493, 
            "RSC": 0.3603769
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.320260364441
        }, 
        "rep1-pr1": {
            "FRiP": 0.300899858993
        }, 
        "rep1-pr2": {
            "FRiP": 0.300654662821
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.270736376485
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.240050031141, 
            "auc": 0.495260534394, 
            "ch_div": 0.104672643086, 
            "elbow_pt": 0.0, 
            "jsd": 0.666249490192, 
            "syn_auc": 0.501629439275, 
            "syn_elbow_pt": 0.210334532375, 
            "syn_jsd": 0.348016751545
        }
    ]
}
