/CEMT/mapping_coverage/A75622_1_lane_gembs
BACK
SAMPLE A75622_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
930692863 |
100% |
121844974564 |
100% |
| Mapped |
923810532 |
99.26 % |
120812624914 |
99.15 % |
| Passed |
724481880 |
77.84 % |
90913327114 |
74.61 % |
| NotPassed |
199328652 |
21.42 % |
29899297800 |
24.54 % |
| |
|
|
|
|
| LowMAPQ |
103768408 |
11.15 % |
15565261200 |
12.77 % |
| MateUnmapped |
6882331 |
0.74 % |
1032349650 |
0.85 % |
| Duplicate |
84134343 |
9.04 % |
12620151450 |
10.36 % |
| BadOrientation |
64 |
0.00 % |
9600 |
0.00 % |
| LargeInsertSize |
8750 |
0.00 % |
1312500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11417087 |
1.23 % |
1712563050 |
1.41 % |
| Unmapped |
6882331 |
0.74 % |
1032349650 |
0.85 % |
Base Level Counts
| Bases |
# |
% |
| Total |
108662599050 |
100% |
| Passed |
84821965938 |
78.06 % |
| Trimmed |
3125296435 |
2.88 % |
| Clipped |
270675008 |
0.25 % |
| Overlapping |
17478596928 |
16.09 % |
| LowQuality |
2966064741 |
2.73 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |