{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 95760278, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 94515062, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.7, 
            "paired": 95760278, 
            "paired_qc_failed": 0, 
            "read1": 47880139, 
            "read1_qc_failed": 0, 
            "read2": 47880139, 
            "read2_qc_failed": 0, 
            "paired_properly": 87275130, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 91.14, 
            "with_itself": 93843651, 
            "with_itself_qc_failed": 0, 
            "singletons": 671411, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.7, 
            "diff_chroms": 5157684, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 140350086, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 136223961, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.06, 
            "paired": 140350086, 
            "paired_qc_failed": 0, 
            "read1": 70175043, 
            "read1_qc_failed": 0, 
            "read2": 70175043, 
            "read2_qc_failed": 0, 
            "paired_properly": 120532551, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 85.88, 
            "with_itself": 134681268, 
            "with_itself_qc_failed": 0, 
            "singletons": 1542693, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.1, 
            "diff_chroms": 9773665, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 40637644, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 490880, 
            "paired_opt_dupes": 2015, 
            "dupes_pct": 0.012079
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 53789939, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 594512, 
            "paired_opt_dupes": 1824, 
            "dupes_pct": 0.011052
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 40634269, 
            "distinct_read_pairs": 40143476, 
            "one_read_pair": 39668169, 
            "two_read_pair": 462089, 
            "NRF": 0.987922, 
            "PBC1": 0.98816, 
            "PBC2": 85.8453
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 53785343, 
            "distinct_read_pairs": 53191094, 
            "one_read_pair": 52633239, 
            "two_read_pair": 539980, 
            "NRF": 0.988951, 
            "PBC1": 0.989512, 
            "PBC2": 97.472571
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 80293528, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 80293528, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 80293528, 
            "paired_qc_failed": 0, 
            "read1": 40146764, 
            "read1_qc_failed": 0, 
            "read2": 40146764, 
            "read2_qc_failed": 0, 
            "paired_properly": 80293528, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 80293528, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 106390854, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 106390854, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 106390854, 
            "paired_qc_failed": 0, 
            "read1": 53195427, 
            "read1_qc_failed": 0, 
            "read2": 53195427, 
            "read2_qc_failed": 0, 
            "paired_properly": 106390854, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 106390854, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 224043, 
        "Np": 0, 
        "N_opt": 224043, 
        "N_consv": 224043, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 150, 
            "corr_est_frag_len": 0.187310385038797, 
            "phantom_peak": 55, 
            "corr_phantom_peak": 0.1806884, 
            "argmin_corr": 1500, 
            "min_corr": 0.1738492, 
            "NSC": 1.07743, 
            "RSC": 1.968232
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.525143449831
        }, 
        "rep1-pr1": {
            "FRiP": 0.496081480533
        }, 
        "rep1-pr2": {
            "FRiP": 0.495911415344
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.468770791828
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.172292480548, 
            "auc": 0.495461314566, 
            "ch_div": 0.143600006398, 
            "elbow_pt": 0.0, 
            "jsd": 0.748348620919, 
            "syn_auc": 0.498873063402, 
            "syn_elbow_pt": 0.307941608659, 
            "syn_jsd": 0.451515933873
        }
    ]
}
