{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 147436474, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 145509257, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.69, 
            "paired": 147436474, 
            "paired_qc_failed": 0, 
            "read1": 73718237, 
            "read1_qc_failed": 0, 
            "read2": 73718237, 
            "read2_qc_failed": 0, 
            "paired_properly": 139152173, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 94.38, 
            "with_itself": 144492601, 
            "with_itself_qc_failed": 0, 
            "singletons": 1016656, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.69, 
            "diff_chroms": 113876, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 145880064, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 143543482, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.4, 
            "paired": 145880064, 
            "paired_qc_failed": 0, 
            "read1": 72940032, 
            "read1_qc_failed": 0, 
            "read2": 72940032, 
            "read2_qc_failed": 0, 
            "paired_properly": 137661111, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 94.37, 
            "with_itself": 142561673, 
            "with_itself_qc_failed": 0, 
            "singletons": 981809, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.67, 
            "diff_chroms": 166819, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 63823233, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 2140200, 
            "paired_opt_dupes": 2760, 
            "dupes_pct": 0.033533
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 60849654, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 702489, 
            "paired_opt_dupes": 2259, 
            "dupes_pct": 0.011545
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 63810988, 
            "distinct_read_pairs": 61671847, 
            "one_read_pair": 59619788, 
            "two_read_pair": 1975862, 
            "NRF": 0.966477, 
            "PBC1": 0.966726, 
            "PBC2": 30.174065
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 60832324, 
            "distinct_read_pairs": 60131363, 
            "one_read_pair": 59468892, 
            "two_read_pair": 649169, 
            "NRF": 0.988477, 
            "PBC1": 0.988983, 
            "PBC2": 91.60772
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 123366066, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 123366066, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 123366066, 
            "paired_qc_failed": 0, 
            "read1": 61683033, 
            "read1_qc_failed": 0, 
            "read2": 61683033, 
            "read2_qc_failed": 0, 
            "paired_properly": 123366066, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 123366066, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 120294330, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 120294330, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 120294330, 
            "paired_qc_failed": 0, 
            "read1": 60147165, 
            "read1_qc_failed": 0, 
            "read2": 60147165, 
            "read2_qc_failed": 0, 
            "paired_properly": 120294330, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 120294330, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 187086, 
        "Np": 0, 
        "N_opt": 187086, 
        "N_consv": 187086, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 150, 
            "corr_est_frag_len": 0.18521836968076, 
            "phantom_peak": 45, 
            "corr_phantom_peak": 0.1804848, 
            "argmin_corr": 1500, 
            "min_corr": 0.1744079, 
            "NSC": 1.061984, 
            "RSC": 1.778951
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.461657294589
        }, 
        "rep1-pr1": {
            "FRiP": 0.450222668859
        }, 
        "rep1-pr2": {
            "FRiP": 0.449865796141
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.427367897262
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.208529350396, 
            "auc": 0.496339866657, 
            "ch_div": 0.101299734695, 
            "elbow_pt": 0.0, 
            "jsd": 0.758206562051, 
            "syn_auc": 0.497424270959, 
            "syn_elbow_pt": 0.290481220934, 
            "syn_jsd": 0.406430837399
        }
    ]
}
