/Martin Hirst/PX0720_TTAGGC_10_lane_gembs/HCVFLCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 188990962 | 100.00 % | 94495481 | 100.00 % | 94495481 | 100.00 % |
| General Reads | 184638335 | 97.70 % | 93126634 | 98.55 % | 91511701 | 96.84 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1173993 | 0.62 % | 591228 | 0.63 % | 582765 | 0.62 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3178634 | 1.68 % | 777619 | 0.82 % | 2401015 | 2.54 % |
| Bisulfite_reads C2T | 94253809 | 49.87 % | 47535096 | 50.30 % | 46718713 | 49.44 % |
| Bisulfite_reads G2A | 91558519 | 48.45 % | 46182766 | 48.87 % | 45375753 | 48.02 % |
| Concept | Value |
|---|---|
| Unique Fragments | 38216862 |
| Average Unique | 40.44 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 10014830974 | 35.09 % | 5177168148 | 36.28 % | 4837662826 | 33.90 % |
| Base Counts Overall C | 4146351332 | 14.53 % | 2221267244 | 15.57 % | 1925084088 | 13.49 % |
| Base Counts Overall G | 4503817187 | 15.78 % | 2059282216 | 14.43 % | 2444534971 | 17.13 % |
| Base Counts Overall T | 9681001782 | 33.92 % | 4716047746 | 33.05 % | 4964954036 | 34.80 % |
| Base Counts Overall N | 191633987 | 0.67 % | 95052277 | 0.67 % | 96581710 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.973163511718194 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 62264968 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 94495481 |
| 150 | 94495481 |
| Insert Size Histogram |
|---|
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