/Martin Hirst/PX0720_TTAGGC_10_lane_gembs/HF7JYCCXY_5_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 158473640 | 100.00 % | 79236820 | 100.00 % | 79236820 | 100.00 % |
| General Reads | 154573286 | 97.54 % | 78005547 | 98.45 % | 76567739 | 96.63 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 985204 | 0.62 % | 496899 | 0.63 % | 488305 | 0.62 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2915150 | 1.84 % | 734374 | 0.93 % | 2180776 | 2.75 % |
| Bisulfite_reads C2T | 78894551 | 49.78 % | 39809224 | 50.24 % | 39085327 | 49.33 % |
| Bisulfite_reads G2A | 76663939 | 48.38 % | 38693222 | 48.83 % | 37970717 | 47.92 % |
| Concept | Value |
|---|---|
| Unique Fragments | 31481648 |
| Average Unique | 39.73 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8436678937 | 35.26 % | 4357421394 | 36.42 % | 4079257543 | 34.09 % |
| Base Counts Overall C | 3460283765 | 14.46 % | 1871667613 | 15.64 % | 1588616152 | 13.28 % |
| Base Counts Overall G | 3797027007 | 15.87 % | 1723787873 | 14.41 % | 2073239134 | 17.33 % |
| Base Counts Overall T | 8074897665 | 33.74 % | 3931704597 | 32.86 % | 4143193068 | 34.63 % |
| Base Counts Overall N | 160632266 | 0.67 % | 80178343 | 0.67 % | 80453923 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9712710494666759 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 51507372 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 79236820 |
| 150 | 79236820 |
| Insert Size Histogram |
|---|
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