/Martin Hirst/PX0720_TTAGGC_10_lane_gembs/HF7JYCCXY_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 160147288 | 100.00 % | 80073644 | 100.00 % | 80073644 | 100.00 % |
| General Reads | 156248734 | 97.57 % | 78845775 | 98.47 % | 77402959 | 96.66 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 996403 | 0.62 % | 502235 | 0.63 % | 494168 | 0.62 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2902151 | 1.81 % | 725634 | 0.91 % | 2176517 | 2.72 % |
| Bisulfite_reads C2T | 79735532 | 49.79 % | 40231895 | 50.24 % | 39503637 | 49.33 % |
| Bisulfite_reads G2A | 77509605 | 48.40 % | 39116115 | 48.85 % | 38393490 | 47.95 % |
| Concept | Value |
|---|---|
| Unique Fragments | 31900684 |
| Average Unique | 39.84 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8524914126 | 35.25 % | 4405929446 | 36.44 % | 4118984680 | 34.07 % |
| Base Counts Overall C | 3494980944 | 14.45 % | 1889885841 | 15.63 % | 1605095103 | 13.27 % |
| Base Counts Overall G | 3835333578 | 15.86 % | 1738448601 | 14.38 % | 2096884977 | 17.34 % |
| Base Counts Overall T | 8164023138 | 33.76 % | 3975834411 | 32.88 % | 4188188727 | 34.64 % |
| Base Counts Overall N | 162988702 | 0.67 % | 81021945 | 0.67 % | 81966757 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9719162150644163 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 52205386 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 80073644 |
| 150 | 80073644 |
| Insert Size Histogram |
|---|
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