/Martin Hirst/PX0720_TTAGGC_10_lane_gembs/HF7JYCCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 160587448 | 100.00 % | 80293724 | 100.00 % | 80293724 | 100.00 % |
| General Reads | 156795124 | 97.64 % | 79068677 | 98.47 % | 77726447 | 96.80 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1000473 | 0.62 % | 504302 | 0.63 % | 496171 | 0.62 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2791851 | 1.74 % | 720745 | 0.90 % | 2071106 | 2.58 % |
| Bisulfite_reads C2T | 80018394 | 49.83 % | 40347251 | 50.25 % | 39671143 | 49.41 % |
| Bisulfite_reads G2A | 77777203 | 48.43 % | 39225728 | 48.85 % | 38551475 | 48.01 % |
| Concept | Value |
|---|---|
| Unique Fragments | 32026777 |
| Average Unique | 39.89 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8550848923 | 35.26 % | 4416437046 | 36.43 % | 4134411877 | 34.10 % |
| Base Counts Overall C | 3506224123 | 14.46 % | 1894364072 | 15.62 % | 1611860051 | 13.29 % |
| Base Counts Overall G | 3840796943 | 15.84 % | 1744421760 | 14.39 % | 2096375183 | 17.29 % |
| Base Counts Overall T | 8187527078 | 33.76 % | 3987938106 | 32.89 % | 4199588972 | 34.64 % |
| Base Counts Overall N | 163307581 | 0.67 % | 81191340 | 0.67 % | 82116241 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9724831051712903 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 52466217 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 80293724 |
| 150 | 80293724 |
| Insert Size Histogram |
|---|
 |