/Martin Hirst/PX0720_TTAGGC_10_lane_gembs/HF7JYCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 162028986 | 100.00 % | 81014493 | 100.00 % | 81014493 | 100.00 % |
| General Reads | 157889206 | 97.45 % | 79783310 | 98.48 % | 78105896 | 96.41 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1008596 | 0.62 % | 509305 | 0.63 % | 499291 | 0.62 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3131184 | 1.93 % | 721878 | 0.89 % | 2409306 | 2.97 % |
| Bisulfite_reads C2T | 80582873 | 49.73 % | 40715324 | 50.26 % | 39867549 | 49.21 % |
| Bisulfite_reads G2A | 78314929 | 48.33 % | 39577291 | 48.85 % | 38737638 | 47.82 % |
| Concept | Value |
|---|---|
| Unique Fragments | 32151795 |
| Average Unique | 39.69 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8628575211 | 35.27 % | 4456845157 | 36.43 % | 4171730054 | 34.10 % |
| Base Counts Overall C | 3534650397 | 14.45 % | 1911186434 | 15.62 % | 1623463963 | 13.27 % |
| Base Counts Overall G | 3883522347 | 15.87 % | 1760128011 | 14.39 % | 2123394336 | 17.36 % |
| Base Counts Overall T | 8253636047 | 33.73 % | 4022871375 | 32.88 % | 4230764672 | 34.58 % |
| Base Counts Overall N | 165992884 | 0.68 % | 82157466 | 0.67 % | 83835418 | 0.69 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9721332264036677 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 52616656 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 81014493 |
| 150 | 81014493 |
| Insert Size Histogram |
|---|
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