/Martin Hirst/PX0720_TTAGGC_10_lane_gembs/HHFYJCCXY_4_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 169866656 | 100.00 % | 84933328 | 100.00 % | 84933328 | 100.00 % |
| General Reads | 164199785 | 96.66 % | 83576961 | 98.40 % | 80622824 | 94.92 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1036121 | 0.61 % | 526175 | 0.62 % | 509946 | 0.60 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4630750 | 2.73 % | 830192 | 0.98 % | 3800558 | 4.47 % |
| Bisulfite_reads C2T | 83776138 | 49.32 % | 42632498 | 50.20 % | 41143640 | 48.44 % |
| Bisulfite_reads G2A | 81459768 | 47.96 % | 41470638 | 48.83 % | 39989130 | 47.08 % |
| Concept | Value |
|---|---|
| Unique Fragments | 32927489 |
| Average Unique | 38.77 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8967774241 | 34.96 % | 4653904763 | 36.29 % | 4313869478 | 33.64 % |
| Base Counts Overall C | 3727454071 | 14.53 % | 2001298679 | 15.60 % | 1726155392 | 13.46 % |
| Base Counts Overall G | 4057381675 | 15.82 % | 1843177726 | 14.37 % | 2214203949 | 17.26 % |
| Base Counts Overall T | 8725541612 | 34.02 % | 4240543911 | 33.06 % | 4484997701 | 34.97 % |
| Base Counts Overall N | 171713457 | 0.67 % | 86007449 | 0.67 % | 85706008 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.97088473919417 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 53052131 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 84933328 |
| 150 | 84933328 |
| Insert Size Histogram |
|---|
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