/Martin Hirst/PX0720_TTAGGC_10_lane_gembs/HHFYJCCXY_5_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 169625052 | 100.00 % | 84812526 | 100.00 % | 84812526 | 100.00 % |
| General Reads | 163533735 | 96.41 % | 83457930 | 98.40 % | 80075805 | 94.42 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1034354 | 0.61 % | 527046 | 0.62 % | 507308 | 0.60 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5056963 | 2.98 % | 827550 | 0.98 % | 4229413 | 4.99 % |
| Bisulfite_reads C2T | 83419929 | 49.18 % | 42560571 | 50.18 % | 40859358 | 48.18 % |
| Bisulfite_reads G2A | 81148160 | 47.84 % | 41424405 | 48.84 % | 39723755 | 46.84 % |
| Concept | Value |
|---|---|
| Unique Fragments | 32647548 |
| Average Unique | 38.49 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8942972926 | 34.92 % | 4651156758 | 36.32 % | 4291816168 | 33.51 % |
| Base Counts Overall C | 3724730924 | 14.54 % | 2003603136 | 15.64 % | 1721127788 | 13.44 % |
| Base Counts Overall G | 4068383290 | 15.88 % | 1835741821 | 14.33 % | 2232641469 | 17.43 % |
| Base Counts Overall T | 8705593070 | 33.99 % | 4230380086 | 33.03 % | 4475212984 | 34.94 % |
| Base Counts Overall N | 171702642 | 0.67 % | 85809625 | 0.67 % | 85893017 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9713231757975322 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 52561893 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 84812526 |
| 150 | 84812526 |
| Insert Size Histogram |
|---|
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