/Martin Hirst/PX0720_TTAGGC_10_lane_gembs/HHFYJCCXY_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 160497684 | 100.00 % | 80248842 | 100.00 % | 80248842 | 100.00 % |
| General Reads | 154829147 | 96.47 % | 78842836 | 98.25 % | 75986311 | 94.69 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 973293 | 0.61 % | 494798 | 0.62 % | 478495 | 0.60 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4695244 | 2.93 % | 911208 | 1.14 % | 3784036 | 4.72 % |
| Bisulfite_reads C2T | 78980888 | 49.21 % | 40211387 | 50.11 % | 38769501 | 48.31 % |
| Bisulfite_reads G2A | 76821552 | 47.86 % | 39126247 | 48.76 % | 37695305 | 46.97 % |
| Concept | Value |
|---|---|
| Unique Fragments | 30820024 |
| Average Unique | 38.41 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8467624225 | 34.94 % | 4398280812 | 36.30 % | 4069343413 | 33.58 % |
| Base Counts Overall C | 3518156856 | 14.52 % | 1900823431 | 15.69 % | 1617333425 | 13.35 % |
| Base Counts Overall G | 3790768293 | 15.64 % | 1732543106 | 14.30 % | 2058225187 | 16.99 % |
| Base Counts Overall T | 8295898817 | 34.23 % | 4004747787 | 33.05 % | 4291151030 | 35.41 % |
| Base Counts Overall N | 162702093 | 0.67 % | 81180006 | 0.67 % | 81522087 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9701780244517293 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 49471173 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 80248842 |
| 150 | 80248842 |
| Insert Size Histogram |
|---|
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