/Martin Hirst/PX0720_TTAGGC_10_lane_gembs/HHFYJCCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 166901052 | 100.00 % | 83450526 | 100.00 % | 83450526 | 100.00 % |
| General Reads | 160514264 | 96.17 % | 82107717 | 98.39 % | 78406547 | 93.96 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1017956 | 0.61 % | 519930 | 0.62 % | 498026 | 0.60 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5368832 | 3.22 % | 822879 | 0.99 % | 4545953 | 5.45 % |
| Bisulfite_reads C2T | 81864465 | 49.05 % | 41863601 | 50.17 % | 40000864 | 47.93 % |
| Bisulfite_reads G2A | 79667755 | 47.73 % | 40764046 | 48.85 % | 38903709 | 46.62 % |
| Concept | Value |
|---|---|
| Unique Fragments | 31973946 |
| Average Unique | 38.31 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8792258995 | 34.89 % | 4578678144 | 36.34 % | 4213580851 | 33.44 % |
| Base Counts Overall C | 3667158222 | 14.55 % | 1968544886 | 15.62 % | 1698613336 | 13.48 % |
| Base Counts Overall G | 4018509121 | 15.95 % | 1805085422 | 14.32 % | 2213423699 | 17.57 % |
| Base Counts Overall T | 8554331659 | 33.94 % | 4164321785 | 33.05 % | 4390009874 | 34.84 % |
| Base Counts Overall N | 169800855 | 0.67 % | 84399189 | 0.67 % | 85401666 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9709753545594504 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 51375069 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 83450526 |
| 150 | 83450526 |
| Insert Size Histogram |
|---|
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