/Martin Hirst/PX0720_TTAGGC_10_lane_gembs/HHFYJCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 159788452 | 100.00 % | 79894226 | 100.00 % | 79894226 | 100.00 % |
| General Reads | 153837244 | 96.28 % | 78551800 | 98.32 % | 75285444 | 94.23 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 973796 | 0.61 % | 496857 | 0.62 % | 476939 | 0.60 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4977412 | 3.12 % | 845569 | 1.06 % | 4131843 | 5.17 % |
| Bisulfite_reads C2T | 78471414 | 49.11 % | 40061491 | 50.14 % | 38409923 | 48.08 % |
| Bisulfite_reads G2A | 76339626 | 47.78 % | 38987166 | 48.80 % | 37352460 | 46.75 % |
| Concept | Value |
|---|---|
| Unique Fragments | 30641285 |
| Average Unique | 38.35 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8422739774 | 34.91 % | 4386104683 | 36.36 % | 4036635091 | 33.46 % |
| Base Counts Overall C | 3512803582 | 14.56 % | 1887846448 | 15.65 % | 1624957134 | 13.47 % |
| Base Counts Overall G | 3834828746 | 15.89 % | 1726357602 | 14.31 % | 2108471144 | 17.48 % |
| Base Counts Overall T | 8195507742 | 33.97 % | 3983228897 | 33.02 % | 4212278845 | 34.92 % |
| Base Counts Overall N | 162176408 | 0.67 % | 80490496 | 0.67 % | 81685912 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9702507227743624 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 49220188 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 79894226 |
| 150 | 79894226 |
| Insert Size Histogram |
|---|
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