/Martin Hirst/mapping_coverage/PX0720_TTAGGC_10_lane_gembs
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SAMPLE PX0720_TTAGGC_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1554845205 |
100% |
217602426118 |
100% |
| Mapped |
1523725961 |
98.00 % |
212934539518 |
97.85 % |
| Passed |
530007815 |
34.09 % |
63876817618 |
29.35 % |
| NotPassed |
993718146 |
63.91 % |
149057721900 |
68.50 % |
| |
|
|
|
|
| LowMAPQ |
673368434 |
43.31 % |
101005265100 |
46.42 % |
| MateUnmapped |
31119244 |
2.00 % |
4667886600 |
2.15 % |
| Duplicate |
53195874 |
3.42 % |
7979381100 |
3.67 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
12623230 |
0.81 % |
1893484500 |
0.87 % |
| |
|
|
|
|
| NotCorrectlyAligned |
254530608 |
16.37 % |
38179591200 |
17.55 % |
| Unmapped |
31119244 |
2.00 % |
4667886600 |
2.15 % |
Base Level Counts
| Bases |
# |
% |
| Total |
79427374650 |
100% |
| Passed |
58453838083 |
73.59 % |
| Trimmed |
2039135929 |
2.57 % |
| Clipped |
4069026209 |
5.12 % |
| Overlapping |
11481530823 |
14.46 % |
| LowQuality |
3383843606 |
4.26 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |