/Martin Hirst/methylation/PX0720_TTAGGC_10_lane_gembs
BACK
SAMPLE PX0720_TTAGGC_10_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26378049 |
19843947 |
75.23 % |
| NonRefCpG |
447282 |
126742 |
28.34 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6703117 |
13.28 % |
5340118 |
12.78 % |
224863 |
29.34 % |
38367 |
11.46 % |
| Intermediate (0.3-0.7) |
7464089 |
14.79 % |
4746667 |
11.36 % |
181101 |
23.63 % |
52704 |
15.74 % |
| Methylated (0.7-1) |
36297637 |
71.93 % |
31712058 |
75.87 % |
360522 |
47.04 % |
243795 |
72.80 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.890 |
|
0.650 |
|
0.870 |
|