/Martin Hirst/PX0681_TATAAT_3_lane_gembs/HCVC2CCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 183762348 | 100.00 % | 91881174 | 100.00 % | 91881174 | 100.00 % |
| General Reads | 180054902 | 97.98 % | 90755576 | 98.77 % | 89299326 | 97.19 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 154449 | 0.08 % | 77575 | 0.08 % | 76874 | 0.08 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3552997 | 1.93 % | 1048023 | 1.14 % | 2504974 | 2.73 % |
| Bisulfite_reads C2T | 91573570 | 49.83 % | 46155591 | 50.23 % | 45417979 | 49.43 % |
| Bisulfite_reads G2A | 88635781 | 48.23 % | 44677560 | 48.63 % | 43958221 | 47.84 % |
| Concept | Value |
|---|---|
| Unique Fragments | 33622789 |
| Average Unique | 36.59 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9624762038 | 34.69 % | 4879454704 | 35.17 % | 4745307334 | 34.20 % |
| Base Counts Overall C | 3811735987 | 13.74 % | 1985018581 | 14.31 % | 1826717406 | 13.17 % |
| Base Counts Overall G | 4459555670 | 16.07 % | 2141549045 | 15.44 % | 2318006625 | 16.71 % |
| Base Counts Overall T | 9666006350 | 34.83 % | 4775306091 | 34.42 % | 4890700259 | 35.25 % |
| Base Counts Overall N | 186054503 | 0.67 % | 92728853 | 0.67 % | 93325650 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9622227775207834 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 54728921 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 91881174 |
| 150 | 91881174 |
| Insert Size Histogram |
|---|
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