/Martin Hirst/PX0681_TATAAT_3_lane_gembs/HCVC2CCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 177542094 | 100.00 % | 88771047 | 100.00 % | 88771047 | 100.00 % |
| General Reads | 173676213 | 97.82 % | 87639036 | 98.72 % | 86037177 | 96.92 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 147643 | 0.08 % | 74100 | 0.08 % | 73543 | 0.08 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3718238 | 2.09 % | 1057911 | 1.19 % | 2660327 | 3.00 % |
| Bisulfite_reads C2T | 88314902 | 49.74 % | 44565299 | 50.20 % | 43749603 | 49.28 % |
| Bisulfite_reads G2A | 85508954 | 48.16 % | 43147837 | 48.61 % | 42361117 | 47.72 % |
| Concept | Value |
|---|---|
| Unique Fragments | 32131399 |
| Average Unique | 36.20 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9288741059 | 34.65 % | 4707819650 | 35.12 % | 4580921409 | 34.17 % |
| Base Counts Overall C | 3683290650 | 13.74 % | 1920416101 | 14.33 % | 1762874549 | 13.15 % |
| Base Counts Overall G | 4319925021 | 16.11 % | 2074527968 | 15.48 % | 2245397053 | 16.75 % |
| Base Counts Overall T | 9336447432 | 34.83 % | 4611516146 | 34.40 % | 4724931286 | 35.25 % |
| Base Counts Overall N | 180452032 | 0.67 % | 90148232 | 0.67 % | 90303800 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9608873473503599 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 52412563 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 88771047 |
| 150 | 88771047 |
| Insert Size Histogram |
|---|
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