/Martin Hirst/PX0681_TATAAT_3_lane_gembs

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SAMPLE PX0681_TATAAT_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 607408952 100.00 % 303704476 100.00 % 303704476 100.00 %
General Reads 596529133 98.21 % 300467894 98.93 % 296061239 97.48 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 510530 0.08 % 256441 0.08 % 254089 0.08 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 10369289 1.71 % 2980141 0.98 % 7389148 2.43 %
Bisulfite_reads C2T 303403989 49.95 % 152819847 50.32 % 150584142 49.58 %
Bisulfite_reads G2A 293635674 48.34 % 147904488 48.70 % 145731186 47.98 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 110568528
Average Unique 36.41 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 31828732255 34.70 % 16119824628 35.15 % 15708907627 34.25 %
Base Counts Overall C 12544893049 13.68 % 6545636626 14.27 % 5999256423 13.08 %
Base Counts Overall G 14731772052 16.06 % 7084245523 15.45 % 7647526529 16.68 %
Base Counts Overall T 31996648469 34.89 % 15801990856 34.46 % 16194657613 35.31 %
Base Counts Overall N 616705927 0.67 % 307678243 0.67 % 309027684 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9619563785092039
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 180918599



Mapping Quality

Mapping Quality Histogram
PX0681_TATAAT_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
PX0681_TATAAT_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HCTVVCCXY_4_2
HCVC2CCXY_7_2
HCVC2CCXY_8_2