/Martin Hirst/mapping_coverage/PX0681_TATAAT_3_lane_gembs
BACK
SAMPLE PX0681_TATAAT_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
556752241 |
100% |
78818647523 |
100% |
| Mapped |
549398904 |
98.68 % |
77715646973 |
98.60 % |
| Passed |
140478317 |
25.23 % |
16377558923 |
20.78 % |
| NotPassed |
408920587 |
73.45 % |
61338088050 |
77.82 % |
| |
|
|
|
|
| LowMAPQ |
232845444 |
41.82 % |
34926816600 |
44.31 % |
| MateUnmapped |
7353337 |
1.32 % |
1103000550 |
1.40 % |
| Duplicate |
40632877 |
7.30 % |
6094931550 |
7.73 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
1359830 |
0.24 % |
203974500 |
0.26 % |
| |
|
|
|
|
| NotCorrectlyAligned |
134082436 |
24.08 % |
20112365400 |
25.52 % |
| Unmapped |
7353337 |
1.32 % |
1103000550 |
1.40 % |
Base Level Counts
| Bases |
# |
% |
| Total |
20985106200 |
100% |
| Passed |
15260774902 |
72.72 % |
| Trimmed |
527454888 |
2.51 % |
| Clipped |
1131165921 |
5.39 % |
| Overlapping |
3476381356 |
16.57 % |
| LowQuality |
589329133 |
2.81 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |