/Martin Hirst/methylation/PX0681_TATAAT_3_lane_gembs
BACK
SAMPLE PX0681_TATAAT_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
24251022 |
4985921 |
20.56 % |
| NonRefCpG |
681210 |
7284 |
1.07 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
10018175 |
23.74 % |
3729613 |
25.49 % |
463393 |
44.84 % |
21905 |
32.20 % |
| Intermediate (0.3-0.7) |
15725108 |
37.26 % |
4264874 |
29.14 % |
360946 |
34.93 % |
24392 |
35.86 % |
| Methylated (0.7-1) |
16455197 |
38.99 % |
6639851 |
45.37 % |
209073 |
20.23 % |
21731 |
31.94 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.600 |
|
0.650 |
|
0.350 |
|
0.500 |
|