{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 88795806, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 85512364, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.3, 
            "paired": 88795806, 
            "paired_qc_failed": 0, 
            "read1": 44397903, 
            "read1_qc_failed": 0, 
            "read2": 44397903, 
            "read2_qc_failed": 0, 
            "paired_properly": 75571048, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 85.11, 
            "with_itself": 84346690, 
            "with_itself_qc_failed": 0, 
            "singletons": 1165674, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.31, 
            "diff_chroms": 6055532, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 121174246, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 117800756, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.22, 
            "paired": 121174246, 
            "paired_qc_failed": 0, 
            "read1": 60587123, 
            "read1_qc_failed": 0, 
            "read2": 60587123, 
            "read2_qc_failed": 0, 
            "paired_properly": 102846930, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 84.88, 
            "with_itself": 116568407, 
            "with_itself_qc_failed": 0, 
            "singletons": 1232349, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.02, 
            "diff_chroms": 9653332, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 29070209, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 367455, 
            "paired_opt_dupes": 1635, 
            "dupes_pct": 0.01264
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 45723686, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 412201, 
            "paired_opt_dupes": 1762, 
            "dupes_pct": 0.009015
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 29064348, 
            "distinct_read_pairs": 28697168, 
            "one_read_pair": 28395316, 
            "two_read_pair": 287204, 
            "NRF": 0.987367, 
            "PBC1": 0.989481, 
            "PBC2": 98.868108
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 45718069, 
            "distinct_read_pairs": 45306289, 
            "one_read_pair": 44922876, 
            "two_read_pair": 373109, 
            "NRF": 0.990993, 
            "PBC1": 0.991537, 
            "PBC2": 120.401481
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 57405508, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 57405508, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 57405508, 
            "paired_qc_failed": 0, 
            "read1": 28702754, 
            "read1_qc_failed": 0, 
            "read2": 28702754, 
            "read2_qc_failed": 0, 
            "paired_properly": 57405508, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 57405508, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 90622970, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 90622970, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 90622970, 
            "paired_qc_failed": 0, 
            "read1": 45311485, 
            "read1_qc_failed": 0, 
            "read2": 45311485, 
            "read2_qc_failed": 0, 
            "paired_properly": 90622970, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 90622970, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 178750, 
        "Np": 0, 
        "N_opt": 178750, 
        "N_consv": 178750, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": -10, 
            "corr_est_frag_len": 0.194549399471421, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2108881, 
            "argmin_corr": 1500, 
            "min_corr": 0.1817091, 
            "NSC": 1.070664, 
            "RSC": 0.4400532
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.420568436559
        }, 
        "rep1-pr1": {
            "FRiP": 0.39250849474
        }, 
        "rep1-pr2": {
            "FRiP": 0.392158522402
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.332876877158
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.185346259388, 
            "auc": 0.494638341028, 
            "ch_div": 0.217585493367, 
            "elbow_pt": 1.05874815656e-298, 
            "jsd": 0.66990813399, 
            "syn_auc": 0.500173563749, 
            "syn_elbow_pt": 0.240424702853, 
            "syn_jsd": 0.393204736685
        }
    ]
}