/CEMT/A75625_1_lane_gembs

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SAMPLE A75625_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1156343530 100.00 % 578171765 100.00 % 578171765 100.00 %
General Reads 1129950968 97.72 % 570067287 98.60 % 559883681 96.84 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10613691 0.92 % 5348852 0.93 % 5264839 0.91 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 15778871 1.36 % 2755626 0.48 % 13023245 2.25 %
Bisulfite_reads C2T 583237965 50.44 % 294114725 50.87 % 289123240 50.01 %
Bisulfite_reads G2A 557326694 48.20 % 281301414 48.65 % 276025280 47.74 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 496665826
Average Unique 85.90 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 66918878998 38.33 % 26119133984 29.92 % 40799745014 46.73 %
Base Counts Overall C 19048634997 10.91 % 692957356 0.79 % 18355677641 21.03 %
Base Counts Overall G 19194140597 10.99 % 18081922766 20.71 % 1112217831 1.27 %
Base Counts Overall T 68258620172 39.09 % 41818050367 47.90 % 26440569805 30.29 %
Base Counts Overall N 1187598266 0.68 % 591872042 0.68 % 595726224 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9898911370270169
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 551704594



Mapping Quality

Mapping Quality Histogram
A75625_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A75625_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HGJ2KCCXY_8_1
HKMWJALXX_1_1