/CEMT/mapping_coverage/A75625_1_lane_gembs
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SAMPLE A75625_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1032096075 |
100% |
133415966269 |
100% |
| Mapped |
1019242198 |
98.75 % |
131487884719 |
98.55 % |
| Passed |
791491061 |
76.69 % |
97325214169 |
72.95 % |
| NotPassed |
227751137 |
22.07 % |
34162670550 |
25.61 % |
| |
|
|
|
|
| LowMAPQ |
116323286 |
11.27 % |
17448492900 |
13.08 % |
| MateUnmapped |
12853877 |
1.25 % |
1928081550 |
1.45 % |
| Duplicate |
97982130 |
9.49 % |
14697319500 |
11.02 % |
| BadOrientation |
58 |
0.00 % |
8700 |
0.00 % |
| LargeInsertSize |
8970 |
0.00 % |
1345500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13436693 |
1.30 % |
2015503950 |
1.51 % |
| Unmapped |
12853877 |
1.25 % |
1928081550 |
1.45 % |
Base Level Counts
| Bases |
# |
% |
| Total |
118715390250 |
100% |
| Passed |
90006486399 |
75.82 % |
| Trimmed |
3244606135 |
2.73 % |
| Clipped |
519889181 |
0.44 % |
| Overlapping |
20870286900 |
17.58 % |
| LowQuality |
4074121635 |
3.43 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |