/CEMT/methylation/A75625_1_lane_gembs

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SAMPLE A75625_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27205951 24161161 88.81 %
NonRefCpG 268659 199675 74.32 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A75625_1_lane_gembs_coverage_refCpG.png ./IMG//A75625_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A75625_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A75625_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A75625_1_lane_gembs_quality_refcpg.png ./IMG//A75625_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A75625_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8272570 15.38 % 7190269 14.36 % 74376 14.52 % 47460 11.19 %
Intermediate (0.3-0.7) 12762703 23.72 % 11464533 22.90 % 133067 25.98 % 103170 24.33 %
Methylated (0.7-1) 32759795 60.90 % 31401688 62.73 % 304703 59.50 % 273446 64.48 %
Median Methylation 0.780 0.800 0.770 0.800